rs31924307 SNP Detail

Summary

• ID
  rs31924307
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161079357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCCATTCC TGGAGTTCCT TATAAAATGC TCAACACATT
  ATTCCTAAAG TTTAAATATA GGTTTCACAA CAGGCTTCTT GAGATCGAGT GTATGCAAGT
  S
  AATTCCCACC TGAAGAAATG GGACATTTTG ATCCACTGAC TTCCTATTTC CTAAGCACAA
  AGTGGAGAAA GATGCCTGCC CTTATTAGAG ACAGATGGC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45085645	mCV24544937	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C
ss145910367	ENSMUSSNP1031057	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31924307					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161079357 () rs orientation: forward

Symbol	Name	Function Class
Cpgi926	CpG island 926	357 bp distal
Gm70781	predicted gene, 70781	within coordinates
Prdx6	peroxiredoxin 6	577 bp upstream
Rr372334	regulatory region 372334	1065 bp downstream
Rr396460	regulatory region 396460	438 bp downstream
Rr396461	regulatory region 396461	within coordinates
Rr421776	regulatory region 421776	1035 bp distal
Rr421777	regulatory region 421777	633 bp distal
Rr421778	regulatory region 421778	78 bp distal
Rr421779	regulatory region 421779	923 bp proximal
Tssr14577	transcription start site region 14577	878 bp upstream
Tssr14578	transcription start site region 14578	648 bp upstream
Tssr14579	transcription start site region 14579	643 bp upstream
Tssr14580	transcription start site region 14580	601 bp upstream
Tssr14581	transcription start site region 14581	259 bp upstream