rs31924411 SNP Detail

Summary

• ID
  rs31924411
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:12569576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG ACTGCCCAAG AGGGTGGTTA
  S
  AATAGAAGAA ACAAACAAAC CGATT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46084135	mCV23046861	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C	G
ss148340677	ENSMUSSNP2729122	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss322106502	CHEV_7_13420998	CHEVERUD	SCREENING_POP	f	SNP						C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31924411					SNP	G	G	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12569576 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18318	CpG island 18318			230 bp distal
Rr642383	regulatory region 642383			878 bp distal
Rr642384	regulatory region 642384			703 bp distal
Rr642385	regulatory region 642385			156 bp distal
Rr642386	regulatory region 642386			within coordinates
Tssr64479	transcription start site region 64479			838 bp downstream
Tssr64480	transcription start site region 64480			597 bp downstream
Tssr64481	transcription start site region 64481			388 bp downstream
Tssr64482	transcription start site region 64482			301 bp upstream
Zfp110	zinc finger protein 110			Intron
				Noncoding-Transcript-Variant