rs31925838 SNP Detail

Summary

• ID
  rs31925838
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18912875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGTCGTT CATCAGAGGA
  CGTTGGGAGA GCGTTCTAGA ACGTTGTCAC TGGGAATAGC TTGATGTCAT CTTTAAAATG
  CTGATACGAC TTAAAGGATA TTTCACATCT TAGTCACAGA ATCTTAAAAC CAAAGCGAGG
  CCCCGGAATT GGTGGAATCT GTATGAAAAA GAGGGACTTC CCCCAAGGTC GCATGGTCAG
  S
  ACACTGTGGT AGAGAGAGGA GGTGGGGATT TCCTTCCTCC TTGCCGGAAC CCTCCTCTTC
  GGCCCATCTC CGCGCATCCT CATCGGCCCC AGGTTGCAGG AAAAGCAGAG AGTGGGGCTG
  GTCCCGGACA GACCCCGAAA AGCCAGAGAG ACTCTCCTGG TCTTTGGAGC GCTCCCCCGC
  ACCCCTCCCG TCCCGTCCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss46084690	mCV25048415	ABI	CRAMUS_MOUSE	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs31925838					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18912875 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18451	CpG island 18451	656 bp distal
Cpgi18452	CpG island 18452	7 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Rr155272	regulatory region 155272	75 bp distal
Rr167138	regulatory region 167138	within coordinates
Rr167139	regulatory region 167139	1925 bp proximal
Tssr64795	transcription start site region 64795	711 bp downstream
Tssr64796	transcription start site region 64796	31 bp upstream