rs31927622 SNP Detail

Summary

• ID
  rs31927622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115876519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGATGCTAT GGTTCAGTCT TCCACTGACC CAGGCTACTG
  AATGGCAGTC CATTGCTGTG AGTTGGGGGG AAAAAGAAAT AAATACAGAC CTGATAAGAG
  Y
  CTTAGAAAGC AGGCCATGGG GGTGCAGCCT TATAACCCCA ATACTTAGGC TAGAGGGTTT
  CAAACTCAAG GTCAGCCTGA AACTTAAATA TAGAATGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45586879	mCV25138407	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss147277485	ENSMUSSNP870359	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss321276780	CHEV_4_115691927	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31927622					SNP	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115876519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14625	CpG island 14625	1119 bp distal
Faah	fatty acid amide hydrolase	485 bp upstream
Rr91643	regulatory region 91643	882 bp proximal
Rr99792	regulatory region 99792	918 bp distal
Tssr42842	transcription start site region 42842	1558 bp upstream
Tssr42843	transcription start site region 42843	1459 bp upstream
Tssr42844	transcription start site region 42844	1288 bp upstream
Tssr42845	transcription start site region 42845	1259 bp upstream
Tssr42846	transcription start site region 42846	1222 bp upstream
Tssr42847	transcription start site region 42847	1191 bp upstream
Tssr42848	transcription start site region 42848	1175 bp upstream
Tssr42849	transcription start site region 42849	1146 bp upstream