rs31929404 SNP Detail

Summary

• ID
  rs31929404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74546751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAC TAAATAAAAT ATGAAAAACT
  R
  CCTTAACTTC AAGTATAAAA AGAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45086158	mCV24840604	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31929404					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74546751 () rs orientation: forward

Symbol	Name	Function Class
Cnot9	CCR4-NOT transcription complex, subunit 9	within coordinates
Cpgi385	CpG island 385	675 bp distal
Rr396106	regulatory region 396106	1516 bp downstream
Rr413210	regulatory region 413210	1800 bp distal
Rr413211	regulatory region 413211	1524 bp distal
Rr413212	regulatory region 413212	359 bp distal
Rr413213	regulatory region 413213	927 bp distal
Tssr7425	transcription start site region 7425	1554 bp downstream
Tssr7426	transcription start site region 7426	1487 bp downstream
Tssr7427	transcription start site region 7427	1472 bp downstream
Tssr7428	transcription start site region 7428	1218 bp downstream
Tssr7429	transcription start site region 7429	1205 bp downstream
Tssr7430	transcription start site region 7430	874 bp downstream
Tssr12315	transcription start site region 12315	1879 bp upstream
Tssr12316	transcription start site region 12316	1748 bp upstream
Usp37	ubiquitin specific peptidase 37	within coordinates