rs31931338 SNP Detail

Summary

• ID
  rs31931338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130663308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCTTCAG CTTGCTTGCC
  CTGGGCTACG CTCAGGGGAT GGCAGGTTTG GAGTTGGCCG CCCTGGGGGT GGCTGTCTGT
  CACTATGGCT GCCCAGTTGG GGCAGGCTAG CCTATGGGGT GTGAAGAGTT GGCCAGAGTC
  ATGTGTTCTA TGGTGGCAGC AAGGAGGGTC AGTTCATATG CCTCTGCTGG CTTTTCTATC
  R
  CTAGGGGTTG CTAGGGGTTG CTAGGGATCT ACACCCTGCC TGTGGTGTAG ATGGGGCTGC
  AGGGCTGAAA AGTTCCCACT GTACCTGTGT CATTGCTTGT GTATGACTTG GAAGAAGGGC
  CAATAAAGCA ACTGCAAGCT TTGCTCTGTC TCATGTGGTT CTTGAAGGGT GATATAGGGA
  CAGAGGACCT GCCTCTGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45587901	mCV25035938	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss147462747	ENSMUSSNP4508616	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321319095	CHEV_4_130491912	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31931338					SNP	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130663308 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr39332	transcription start site region 39332	1529 bp downstream
Tssr39333	transcription start site region 39333	1514 bp downstream
Tssr39334	transcription start site region 39334	1465 bp downstream
Tssr39335	transcription start site region 39335	1447 bp downstream
Tssr39336	transcription start site region 39336	1431 bp downstream
Tssr39337	transcription start site region 39337	1404 bp downstream
Tssr39338	transcription start site region 39338	1371 bp downstream
Tssr39339	transcription start site region 39339	1324 bp downstream
Tssr39340	transcription start site region 39340	1276 bp downstream
Tssr39341	transcription start site region 39341	1258 bp downstream
Tssr39342	transcription start site region 39342	1172 bp downstream
Tssr39343	transcription start site region 39343	1151 bp downstream
Tssr39344	transcription start site region 39344	1090 bp downstream
Tssr39345	transcription start site region 39345	1053 bp downstream
Tssr39346	transcription start site region 39346	1038 bp downstream
Tssr39347	transcription start site region 39347	484 bp downstream
Tssr39348	transcription start site region 39348	6 bp upstream
Tssr39349	transcription start site region 39349	51 bp upstream
Tssr43605	transcription start site region 43605	1424 bp upstream
Tssr43606	transcription start site region 43606	1165 bp upstream
Tssr43607	transcription start site region 43607	883 bp upstream
Tssr43608	transcription start site region 43608	139 bp downstream