rs31933447 SNP Detail

Summary

• ID
  rs31933447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:188919654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGTGCA CCGCAGGCTC
  CCCAGACACT TCCTGGATAT CACACATTTA TATAAAATCA GCCCAAAGAG AGAGATCGCA
  AAGCCAGAAA CCTTGTCTGA AAATGCTTTA AAATGAGTTT GGAAAACTTT GGAATGTGTA
  AGTTTGAATC TTGGAAATTC ACTCTCTACT ACATGTGTCT TGGACAATGA GCATTAGCGT
  Y
  GTAGACTATA ATTTAAATTT GGATCATAAA TTAAATTATT AGAAAAGTAA CAATTAAAAT
  ACATTTTCTA CAAAGCTGCC CACTAGACTA GTCTCTGCTA GAAACACAGA TTTAAAATTC
  AAGCTTGTTT TCCCATAATA ACTACTATAC TCACTATAAG ACTAATCATT ACTGTAATGT
  GTGTATTTTG GGCAAATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45086775	mCV23588920	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				C
ss46754749	NES10650382	PERLEGEN	MM_PANEL2	f	SNP	T			C	C	C		C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31933447					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46754749	NES10650382	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188919654 () rs orientation: forward

Symbol	Name	Function Class
Rr1101	regulatory region 1101	within coordinates
Rr425767	regulatory region 425767	1665 bp distal
Rr425768	regulatory region 425768	107 bp proximal
Rr425769	regulatory region 425769	302 bp proximal