rs31934699 SNP Detail

Summary

• ID
  rs31934699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154933707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGACACCG CTCTCCTCTC TCTTGCCCCT TTACACTGAA
  CTCCATCCAG CCTTTGCTCC ATGGAAGACC AACCCACCAG TAAGCTAGCA AAAGTCTGCA
  Y
  GTCAGAGGTG ACTCGTGCAT GCCACCTGTC CCTGCCCTGG TTTACTTTCT ATTGCTATGA
  TAAACATAAT GATAAGATGA AACTTGGGGA GGGAAAGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45086959	mCV24610723	ABI	CRAMUS_MOUSE	f	SNP		T	T						C
ss49516954	NES12844767	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	C	T	T	T	T	T	C
ss145774486	ENSMUSSNP4970780	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31934699					SNP	T	T	T	T	T	T	T	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49516954	NES12844767	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154933707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	1701 bp proximal
Gm29282	predicted gene 29282	782 bp upstream
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	1036 bp downstream
Rr372279	regulatory region 372279	664 bp downstream
Rr396410	regulatory region 396410	1597 bp upstream
Tssr248	transcription start site region 248	1562 bp downstream
Tssr9521	transcription start site region 9521	1725 bp upstream
Tssr9522	transcription start site region 9522	1983 bp upstream
Tssr14331	transcription start site region 14331	1573 bp downstream
Tssr14332	transcription start site region 14332	1587 bp downstream
Tssr14333	transcription start site region 14333	1597 bp downstream