rs31935151 SNP Detail

Summary

• ID
  rs31935151
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108691981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCGATAAGG GGGCAGAGCG GAGCTTCTGC TGGAAATCCT
  GTTCCCTCAA TCCGGTGGCT CTGTGCAACT ACCACCGTGG AGATGTCGCT TCGTTTCGGG
  S
  CCACCTGTTT GCTGAGCTTC AGTTTCCTGC TCCTCATCAC TTCTTCAGAC GGACGCACTG
  GGCTTGGAAA GGGTCAGACC TCATTCTTAC CGTAATCTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45588108	mCV23912978	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss147191126	ENSMUSSNP903341	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31935151					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108691981 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Btf3l4	basic transcription factor 3-like 4			1170 bp upstream
Cpgi14564	CpG island 14564			645 bp distal
Cpgi14565	CpG island 14565			within coordinates
Rr376990	regulatory region 376990			within coordinates
Rr597224	regulatory region 597224			1241 bp distal
Rr597225	regulatory region 597225			680 bp distal
Rr597226	regulatory region 597226			173 bp distal
Tssr38313	transcription start site region 38313			167 bp downstream
Tssr38314	transcription start site region 38314			79 bp downstream
Tssr38315	transcription start site region 38315			33 bp downstream
Tssr38316	transcription start site region 38316			18 bp upstream
Tssr42738	transcription start site region 42738			1187 bp upstream
Tssr42739	transcription start site region 42739			1158 bp upstream
Tssr42740	transcription start site region 42740			530 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)			Coding-NonSynonymous
				Noncoding-Transcript-Variant