rs31935674 SNP Detail

Summary

• ID
  rs31935674
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172039945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTTCTGAG GAGAAGCACA GAGCCCCTCC
  TTTGTTCCCG AGTCTGATTA TGACTGGCCT TGTACCTTTG AGCTATTCAC ATCTCTAAAA
  AGTCCTCAGT TCCTGCATAT CTATAtctgt ctgtctgtct gtctgtctgt ctgtctgtct
  R
  tctatctATA AGATTATTTT TAttattttt acttatgtat gtatgaatgt ttaccatgtg
  tatgcatacc ttcagaggcc agaagagggt gatggctccc ctgtagctga aacagccacc
  agacgtgggt gccaagaact gagctcaagt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45087062	mCV23614852	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss120010393	PARCsnp_1.07464	PARC_SEQ	INBRED	f	SNP			A	G
ss146184067	ENSMUSSNP6684434	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320123267	CHEV_1_174142509	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31935674					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172039945 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr15173	transcription start site region 15173	1959 bp upstream
Tssr15174	transcription start site region 15174	1905 bp upstream
Tssr15175	transcription start site region 15175	356 bp upstream
Tssr15176	transcription start site region 15176	686 bp downstream
Tssr15177	transcription start site region 15177	740 bp downstream
Tssr15178	transcription start site region 15178	764 bp downstream
Tssr15179	transcription start site region 15179	786 bp downstream
Tssr15180	transcription start site region 15180	991 bp downstream
Tssr15181	transcription start site region 15181	1567 bp downstream