rs31936255 SNP Detail

Summary

• ID
  rs31936255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137445268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGTG ACTCACGGGC AGACGGGGAC
  Y
  GAGTCCGTAT ACTGCAACTT CCGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45588114	mCV23446141	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss147617652	ENSMUSSNP1160750	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	T
ss321366740	CHEV_4_137273872	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31936255					SNP	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137445268 () rs orientation: forward

Symbol	Name	Function Class
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	1533 bp proximal
Rr100343	regulatory region 100343	1332 bp proximal
Tssr39776	transcription start site region 39776	602 bp downstream
Tssr39777	transcription start site region 39777	576 bp downstream
Tssr39778	transcription start site region 39778	1257 bp upstream
Tssr39779	transcription start site region 39779	1287 bp upstream
Tssr39780	transcription start site region 39780	1563 bp upstream
Tssr39781	transcription start site region 39781	1728 bp upstream