rs31936342 SNP Detail

Summary

• ID
  rs31936342
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57870294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAGTATA GACCAGGCCC
  TCAGCACACA CAACGAACAC CCAGGCAGGG TCTCTATCAC AAACATCCCT GGCTCTAGAA
  TTGTGAGAAA TCACTCACAA TTATTTATGG GTTACCCACT TTACTGTATG ATGTGATAAT
  AATGGTAAAT GGATTAAAAA TTTCTTTCCT TCTTTTTGGT GTTCAAAAGA CAAACTCAGC
  S
  TGAGTTAAAG AGGTACCATA TGCTGTTTAT AGGGAATTCA TGCACTGCTA AGTGGCTAAG
  GAACCACTGT GATGTTATAA TGGATGCTGA CAATCCTGTA GGCTATCTAT ATATAGCCTA
  CATATTTAGC CTCTGTATAG TTTATTTTGG CTGGTTTTAT GAGAAAAGTT GTCTAGCTGT
  GGCTTCAGAA GATAATTTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47106532	NES11242450	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	G	C	C	C	G		C	C	G	C
ss137785071	ENSMUSSNP6011413	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C					C				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31936342					SNP	C	C	C	C	C	G	C	C	C	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47106532	NES11242450	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57870294 () rs orientation: forward

Symbol	Name	Function Class
Rr256918	regulatory region 256918	307 bp proximal