rs31938019 SNP Detail

Summary

• ID
  rs31938019
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57871089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCATGTC CAACAGTGAT
  TCAATTTGCT TTGCCAGTCA GGATTCAGGC CACATGTCTT CGAATAATCC CCGATCACCC
  TCCTCTTCCT CTGACAATGC CTCTTGTTTC TACATATTCT TGGGATATTA CAATGCAGAC
  AAGAATAGGA ATTGGGAAAT TTGGCAGCAT CTTTTAGCTA TTATATAATA TGAATGTAGG
  S
  TAAGCCAAGT GAGATAATGT GATAGAATAT GATGTCTAGG AGACCATTTC CCCTGTATGC
  AAAGGGAACA CACAGAATTG ATACTGAAAA CAAGTCTGTT TGTTTTAGGT CTGTTTTTTC
  TTTGTATCTG GCACTGTGGC AGGTGTGTAA TGGATATTTA ACCTATGGTA TTTAGTTAAT
  GTCATTTAGA AAAGTGAATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47106550	NES11242456	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31938019					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47106550	NES11242456	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57871089 () rs orientation: forward

Symbol	Name	Function Class
Rr256918	regulatory region 256918	89 bp distal
Rr256919	regulatory region 256919	1312 bp proximal
Rr269559	regulatory region 269559	1331 bp proximal