rs31938943 SNP Detail

Summary

• ID
  rs31938943
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73604330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGGAGCCG GGTGTGTGGC TGGAGTGGGG TTGAGACATT
  TCATCTAGGA GCCATCTGAC CGTCTGTCCA CCCCTCCCCC GCCCAGAGGA GGCCCAATAG
  Y
  GCTGATCACA GGACTCAGGC AAAGCCACTT GGGGCTCCAT CCCAGGGTGG TCTGTGTGAT
  GTGTGTGGGA TCCTGGGAAC AGGAGGGGAC ACACGTTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss39342674	mCV23352510	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss148118202	ENSMUSSNP5693773	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs31938943					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73604330 () rs orientation: forward

Symbol	Name	Function Class
Ptp4a3	protein tyrosine phosphatase 4a3	within coordinates
Rr311850	regulatory region 311850	within coordinates
Rr369950	regulatory region 369950	40 bp upstream