rs31939387 SNP Detail

Summary

• ID
  rs31939387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30737952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCAGGGG CTCTACCACT
  GAGCCACACC CCAGCCCCTC ACTGGAGGAT TCTAGGCAGG GGCGCTACCA CTGAGCCACG
  CCCCCAGCCC CTCACTGGAG GATTCTAGGC AGGGGCTGTA CCACTGAGCC ACGCCCCCAG
  CCCCTCACTG GAGGATTCTA GGCAGGGGCT GTACCACTGA GCCACGCCCC CAGCCCCTCA
  Y
  TGGAGGATTC TAGGTAGGGG CTCTACCACT GAGCCATGCC TTCAGCATCA CTAATCATTA
  ACTGAAGAAA TTACAAGAAG TACTCTAAAT TATATTATAC TCCAAGAAAA AGTATAATTA
  TTATTTAGAA AAAAAAAATC TAAAGAGATC CAGACCTGAA CAGAAGCTAT GGCTGAGCAC
  TCACCGGAAG TGTTTATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss46085274	mCV22838002	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31939387					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30737952 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	within coordinates
Gm71772	predicted gene, 71772	1214 bp downstream
Mir7050	microRNA 7050	1731 bp downstream
Rr368303	regulatory region 368303	1943 bp upstream
Rr644981	regulatory region 644981	1528 bp distal
Rr644982	regulatory region 644982	1232 bp distal
Rr644983	regulatory region 644983	1817 bp proximal
Tssr65831	transcription start site region 65831	1519 bp downstream
Tssr65832	transcription start site region 65832	1110 bp downstream
Tssr65833	transcription start site region 65833	671 bp downstream
Tssr65834	transcription start site region 65834	640 bp downstream
Tssr71892	transcription start site region 71892	1433 bp upstream
Tssr71893	transcription start site region 71893	660 bp upstream
Tssr71894	transcription start site region 71894	637 bp upstream
Tssr71895	transcription start site region 71895	608 bp upstream
Tssr71896	transcription start site region 71896	578 bp upstream
Tssr71897	transcription start site region 71897	532 bp downstream
Tssr71898	transcription start site region 71898	1681 bp downstream