rs31939723 SNP Detail

Summary

• ID
  rs31939723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:75425191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG GGGTGACCAG TTACAAGGAA
  Y
  TGGCACCAAC AGTGTCCTTC CTGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	PWD/PhJ
ss46085571	mCV25436511	ABI	CRAMUS_MOUSE	f	SNP	T	C						C	T
ss61022222	NES16110609	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	T		T	C	C
ss145084017	ENSMUSSNP5226663	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	PWD/PhJ
rs31939723					SNP	T	C	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61022222	NES16110609	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:75425191 () rs orientation: forward

Symbol	Name	Function Class
AU020206	expressed sequence AU020206	within coordinates
Rr380973	regulatory region 380973	within coordinates
Tssr73053	transcription start site region 73053	1370 bp upstream
Tssr73054	transcription start site region 73054	1321 bp upstream
Tssr73055	transcription start site region 73055	1286 bp upstream
Tssr73056	transcription start site region 73056	1163 bp downstream
Tssr73057	transcription start site region 73057	1343 bp downstream