rs31939998 SNP Detail

Summary

• ID
  rs31939998
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57871698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATAACC TGAAATGACC
  CGCTGTTCTA CATTAGACTT CACATGTTCT CTCCTGCAGC TTGAGGTGCT CATGAAGTTG
  AATGAGGAAA GCTCTTAAGC CCAAGCAGAG GCAGAGTGTG ATATATGCTC ATTGAAACAG
  CTGACCCATT TCCTTCTGGG TTTGCTGACT TTAGATGGCA GGCCACAGGA TGTGTGTTTG
  R
  AATGTAATGT AGATACTGCC TGAGTGTCAA AGTCCTTCCC ATCTTAACTG GATGGGTCTA
  TCCTGACCCT AATCATCACC CATGCTATTC TCAGGGTACC TTCAATGGAT AAGGTCCCTA
  GCACAAAGCC ACAGTCACCT ACAGACGTGT GGTGGTTTAA ATGAGAAAGG TCTCCCAAAC
  GTTCTGGTAT TTGAATACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47106571	NES11242463	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	G	G		A
ss324051858	CHEV_12_58925899	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31939998					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47106571	NES11242463	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57871698 () rs orientation: forward

Symbol	Name	Function Class
Rr256918	regulatory region 256918	698 bp distal
Rr256919	regulatory region 256919	703 bp proximal
Rr269559	regulatory region 269559	722 bp proximal