rs31940001 SNP Detail

Summary

• ID
  rs31940001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57872253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTGCTC CAGGTGCTCG
  GCATGCTACT TGCCGTCACA CCTCCACACC ACGATGGACT CTGACTCTCT GAAACTGTAA
  GCCCAAATAA ACCCTTTATT CTACCAGTGC CTTGGTTATG ATATTTTATC ACAACAGCAG
  ACAAGAAAAG CTATGGAACT AGGGCACTTG TAGTGTTCTC TGGAGATAGT TGAGAAGGCA
  Y
  TTCAGCAAAC TGAAGGTGCT TTCTGACTCT TTGACACATC ACCTGCTTTT CAAGCCACCG
  AGAACATGTT CTTACACTTG TTCGTTGCTT TTATGTGGTG TTAGACTGTT GTGTATGTCG
  TTGTACATAT ATCATCATCC AAGGACATGC AATACCAATT ATTAGATGAA AATTTTATTC
  TCATAAGGGA AAATACTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47106574	NES11242406	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31940001					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47106574	NES11242406	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57872253 () rs orientation: forward

Symbol	Name	Function Class
Rr256918	regulatory region 256918	1253 bp distal
Rr256919	regulatory region 256919	148 bp proximal
Rr269559	regulatory region 269559	167 bp proximal