rs31940407 SNP Detail

Summary

• ID
  rs31940407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78002318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACATTTC ACAACTTCAA
  GGAGAGGGAT TGGAGACTCA CCTACATAGG AGGCATGCCA AAAAGGGTAT GTGGATGAGA
  GACATTCTTG TGGTCATTCT TGGAAAATAT AAGCAAACAT GGTTTCACTC TTACCCTGGC
  TCCGCACACA TGGTAGAAAG GCTGACTGCA GAAGCTCCAG GCAGACCTGA GACTTATTTT
  Y
  TGGCTTCCCA GAAAGAGAAA TACTTCCTTT CCTAGGACAC TGCCGATCCC AAGAAAAGAA
  CTGTGGTTGG CCAGCCTGGG TCATATGTTT ACCCAATTGC AGATGCTGCC AAAGCTATGT
  TAAGCCAGGG ATAGTCTGTT CCAGAATGGA AAACCATCTC TTTGATACCA GAAGAATAAA
  GGAGATCCTA GCAGAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45087899	mCV25069696	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		C
ss51286156	NES14517133	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	C	C	T	T	C	T	T	C
ss144739017	ENSMUSSNP487977	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31940407					SNP	T	T	T	T	T	T	T	C	T	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51286156	NES14517133	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78002318 () rs orientation: forward

Symbol	Name	Function Class
Gm70314	predicted gene, 70314	1858 bp downstream