rs31940511 SNP Detail

Summary

• ID
  rs31940511
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45159026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAAATG TGGTTTTCAG
  GTTTTCTTCA TTCCTTGTTA AAGAGGGTCT TAACGATCAG AGGGGAAAGT TTAGATGAGG
  GTGTGACACA GGTTTTCATT TGGGATCTGT CTTGATTTCC ACATCTCAAA GGTCACTGCC
  CCCAGGTCTG CTTGCAAGTC TCACACACTC ACTATGGCAA AGGAAGGCGG GTAAACGACA
  Y
  GCCTCAGCGT ATCAAACAGG GGATCCCTTG GAGTTTTCTC CAGGGCCCTG GGGATGGCAA
  GCACCACTGC AAAGACGCCA GCGACCAGGG CAGGGCTACT CACCGGGGTC TCAGTGGCCT
  GGCTGTCCTC CTGAGGAGGT GCTGCGCGGT CCACGGGCAC TGCCAGCACA GCAGACAGCA
  TCAGTAGAGG TGGTAGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46085965	mCV22698116	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss61003339	NES16128354	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T	C	C	C	T	C	T	T	C
ss149136077	ENSMUSSNP1836977	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31940511					SNP	C	T	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003339	NES16128354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45159026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19064	CpG island 19064	68 bp proximal
Nucb1	nucleobindin 1	within coordinates
Rr400313	regulatory region 400313	679 bp upstream
Rr646471	regulatory region 646471	1644 bp distal
Rr646472	regulatory region 646472	within coordinates
Rr646473	regulatory region 646473	714 bp proximal
Rr646474	regulatory region 646474	1437 bp proximal
Tssr72423	transcription start site region 72423	749 bp downstream
Tssr72424	transcription start site region 72424	764 bp downstream
Tssr72425	transcription start site region 72425	798 bp downstream
Tulp2	TUB like protein 2	within coordinates