rs31940804 SNP Detail

Summary

• ID
  rs31940804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57872281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCGTCA CACCTCCACA
  CCACGATGGA CTCTGACTCT CTGAAACTGT AAGCCCAAAT AAACCCTTTA TTCTACCAGT
  GCCTTGGTTA TGATATTTTA TCACAACAGC AGACAAGAAA AGCTATGGAA CTAGGGCACT
  TGTAGTGTTC TCTGGAGATA GTTGAGAAGG CATTTCAGCA AACTGAAGGT GCTTTCTGAC
  Y
  CTTTGACACA TCACCTGCTT TTCAAGCCAC CGAGAACATG TTCTTACACT TGTTCGTTGC
  TTTTATGTGG TGTTAGACTG TTGTGTATGT CGTTGTACAT ATATCATCAT CCAAGGACAT
  GCAATACCAA TTATTAGATG AAAATTTTAT TCTCATAAGG GAAAATACTA CTTAAACACT
  TCAGTTTTGT GGTCTGGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47106577	NES11242408	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31940804					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47106577	NES11242408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57872281 () rs orientation: forward

Symbol	Name	Function Class
Rr256918	regulatory region 256918	1281 bp distal
Rr256919	regulatory region 256919	120 bp proximal
Rr269559	regulatory region 269559	139 bp proximal