rs31940809 SNP Detail

Summary

• ID
  rs31940809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57872404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGAACTA GGGCACTTGT
  AGTGTTCTCT GGAGATAGTT GAGAAGGCAT TTCAGCAAAC TGAAGGTGCT TTCTGACTCT
  TTGACACATC ACCTGCTTTT CAAGCCACCG AGAACATGTT CTTACACTTG TTCGTTGCTT
  TTATGTGGTG TTAGACTGTT GTGTATGTCG TTGTACATAT ATCATCATCC AAGGACATGC
  R
  ATACCAATTA TTAGATGAAA ATTTTATTCT CATAAGGGAA AATACTACTT AAACACTTCA
  GTTTTGTGGT CTGGCCAATG CAGGGGCATG GACATGGAGT GTTCCAAACT GAAGGATGCT
  GACTCTGTGG TGGGACTTAG TAATTCTCTT AGGAAACTGT AGGTTGTTCC CAATCTGTTT
  GCTGCCTTTA ACTAATCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47106583	NES11242411	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31940809					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47106583	NES11242411	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57872404 () rs orientation: forward

Symbol	Name	Function Class
Rr256918	regulatory region 256918	1404 bp distal
Rr256919	regulatory region 256919	within coordinates
Rr269559	regulatory region 269559	16 bp proximal