rs31941673 SNP Detail

Summary

• ID
  rs31941673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117912458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCTCGGT GTCCTTAGTG
  CATTCTTCTT GTCATTCACA GAGTCAGGAA ATGTTCGTTG GGCATCTACT ATGTACTAGA
  ATACTATGAT ACGGTAGTCA GCAGCAACAA CAGCAACATG TGGTCTGTGC TCCCGTGGGT
  CTCCTTGCCT TTCATCTTGG AAAGAGACCT TATCAGAGGA CAAACTATTT AGCTAGACAC
  Y
  GAGAAGAACA ACTCAGAGAA GCCGTTGCGG TCGGTGCTAG GGACCAGCCT GAGGGCACTG
  CGCATAATAA GCTTCTCTGG AGAAGCTGGA CCTTGGGCTA GGGCTGATGG GGATGCTGAG
  GGTTAAAGCC AACAAGAATG GGATGAGCAT CACAGGCACA GAGATGGCCT CATGTCCGTA
  AAGACCTGAA GGAAGAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45588443	mCV24294420	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss147298645	ENSMUSSNP6680689	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss321281385	CHEV_4_117727866	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31941673					SNP	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117912458 () rs orientation: forward

Symbol	Name	Function Class
Rr598293	regulatory region 598293	1021 bp distal
Rr598294	regulatory region 598294	220 bp distal
Rr598295	regulatory region 598295	1945 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	within coordinates
Tssr43029	transcription start site region 43029	506 bp upstream