rs31941758 SNP Detail

Summary

• ID
  rs31941758
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44889883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATCGTCTGGG CTTCAACCTC AACCTGTGGT CGCCCAAGCT CTTAGAGCCG TGTGAAATCC
  TATTCAGGGA CACGCTAACC ATTGGTTGGC ATCTTTTCCC TTTCCCAGCA TGAGATTCCT
  AGGGGGAGAT TCCCCTTTCT TTGTGCTTCA TTGTCCCAAT AATCGGACAG ATAGGTTGAG
  ACACTTAGCT TATCTTCCCT TCCTCCTGTG GGGTCTGGGA TGGAACACCG TTTGGTGGCA
  CATCTGGGCC TCTCATTTGC CAGTTTTTAA TTCTTATCTG CTGTCCTTAA AATCCCTAAT
  Y
  GGCCTTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTTTATTT
  TGCTCCTGAA AGGGAGGCGT TTAGTAATTA ACAGTGGTTT GAAATCAACA CGGAATAATT
  GTGAAGATTA AGTCTTTGCA CCATTTCTGC CTGTGGCATC AAGGAATCAA AGCACTGGGG
  TCACACAGGG GTGGAAGGCT GCGCCCAGAG GCAAAGGCGC TGCGGCGCAC GCGCAGTCAG
  AAGCTGCGAG CACGTGTATG TGCACGCGCA CCGGAAGCGC CACAGCAAAC TCCTTCGCGT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46085782	mCV27566846	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31941758					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44889883 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	1344 bp upstream
Cpgi19038	CpG island 19038	111 bp proximal
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	626 bp upstream
Tssr66503	transcription start site region 66503	615 bp upstream
Tssr66504	transcription start site region 66504	650 bp upstream
Tssr72351	transcription start site region 72351	1703 bp upstream
Tssr72352	transcription start site region 72352	1595 bp upstream
Tssr72353	transcription start site region 72353	1393 bp upstream
Tssr72354	transcription start site region 72354	1356 bp upstream
Tssr72355	transcription start site region 72355	1326 bp upstream
Tssr72356	transcription start site region 72356	1172 bp upstream
Tssr72357	transcription start site region 72357	1164 bp upstream
Tssr72358	transcription start site region 72358	1139 bp upstream
Tssr72359	transcription start site region 72359	1109 bp upstream
Tssr72360	transcription start site region 72360	1072 bp upstream
Tssr72361	transcription start site region 72361	1049 bp upstream