rs31941834 SNP Detail

Summary

• ID
  rs31941834
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45158527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG GCTTCAAGAT TTCACAGAGT
  W
  GAGTACTAAC GCCTGGCAGG AGGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46085868	mCV22698104	ABI	CRAMUS_MOUSE	f	SNP		A	T					T
ss61003342	NES16128351	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	T	T	A	T	A	T
ss149136055	ENSMUSSNP1974757	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31941834					SNP	T	A	T	T	T	T	T	T	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003342	NES16128351	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45158527 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19064	CpG island 19064			567 bp proximal
Nucb1	nucleobindin 1			Intron
Rr400313	regulatory region 400313			1178 bp upstream
Rr646471	regulatory region 646471			1145 bp distal
Rr646472	regulatory region 646472			within coordinates
Rr646473	regulatory region 646473			1213 bp proximal
Rr646474	regulatory region 646474			1936 bp proximal
Tssr72423	transcription start site region 72423			1248 bp downstream
Tssr72424	transcription start site region 72424			1263 bp downstream
Tssr72425	transcription start site region 72425			1297 bp downstream
Tulp2	TUB like protein 2			Intron
				Noncoding-Transcript-Variant