rs31942300 SNP Detail

Summary

• ID
  rs31942300
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:120234120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACAATAGA AGACTATATT
  AAGTCCCTGA TTATACACAC ACGCGCAAAT TTGCGCGAGA AAATTTCACG AGATTGAGTC
  CTTGCTGGTG ACGATCTCCT TGCGGCAAGG AGACCTACAA GTGTGTCGAT CTGTTCGACG
  AGACATTCGT CCTGCCAGTT TCTGTGAACT CGGTCACCAA GTTCGCGGTA CCGGGAAGAC
  W
  ACAGTAAAAG TGGCGAGGGA CGACCTCCGA GGAACAGGGA GTGCCGACGA CTCCCGGACT
  TGCGAGGACT CACGGGCAGG CCCAAGACGG CTGGGGTGAC TGTGACGGCT GCAGACGCAG
  CTGGGATTAC AGGCTGCATG TCTTTTGCAG AAAAAGAACT CAGAAAGGAT AACCTACAAA
  AGCTGCAATC TAGTCCGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46086603	mCV22887057	ABI	CRAMUS_MOUSE	f	SNP		T	A					T		T
ss47191747	NES11592695	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	T	T	T		T	T	T	T	T	T	T	T	T
ss145823109	ENSMUSSNP6720755	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31942300					SNP	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47191747	NES11592695	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:120234120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19646	CpG island 19646	within coordinates
Gm45112	predicted gene 45112	11 bp upstream
Rr654736	regulatory region 654736	within coordinates
Rr654737	regulatory region 654737	290 bp proximal
Tssr68788	transcription start site region 68788	303 bp upstream
Uqcrc2	ubiquinol cytochrome c reductase core protein 2	292 bp upstream