rs31942538 SNP Detail

Summary

• ID
  rs31942538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:33962303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGTTAAG GATGCAGATT
  TCATCCCAAG AAAGATCAAG AGAAGATAAT GTGAAGCCGG TGGGTAAACG CAGATGGAGT
  TCTAATACAG CTAAACGACC AGAGGAGGTC AGGAAGGAGA GCACACTAAA TAAGAAGTCA
  GAGGGGAGAG CCGAGCATAG CACTGTGTGT ACACGGTCCA GTGCTTGGGC AGCTGAAGTG
  R
  GAGGATGTCT GGAATCATGA GCTAAAGACC CTGCTGGACA ACAAAGTGAA GCCAAATCTC
  AAGAAGCAAG CCCAGACCCC CCAAATAACT AACAACCCAC CCAAAGACCC CACCCACCAA
  CAGGACTCCA GAGAAGGTAC ACTGAACATT GGTAAAGACA CAGACATCAA ATCAGCATGT
  CTTTTGGCTA CATTAAATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45088124	mCV23733554	ABI	CRAMUS_MOUSE	f	SNP	A		G	G	G
ss148879470	ENSMUSSNP3031455	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31942538					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:33962303 () rs orientation: forward

Symbol	Name	Function Class
Dst	dystonin	within coordinates
Gm37354	predicted gene, 37354	within coordinates
Tssr6161	transcription start site region 6161	746 bp downstream