rs31942540 SNP Detail

Summary

• ID
  rs31942540
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165431006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCAAGCAGT ACCCGAATCA GAGCACGGAG GCTTGTTTAA
  ACACAGCACA GCTAACAAGT CTAGGTCAGC AAAGCTCACA GAGAGAGGCC CCGTCATCCG
  S
  GCACGTGGTC CCCTCTAACC ACAGTCCCTC TAGGATGACT CAAGTTAGCT AGTGCGTGTG
  TGACACTGCG CATGCCATAC CAACTTGAAA CCAGCCTCC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45088127	mCV23031064	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss146003141	ENSMUSSNP4281173	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31942540					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165431006 () rs orientation: forward

Symbol	Name	Function Class
Mpzl1	myelin protein zero-like 1	within coordinates
Rr422396	regulatory region 422396	within coordinates
Tssr14771	transcription start site region 14771	1477 bp upstream