rs31942753 SNP Detail

Summary

• ID
  rs31942753
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134656523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA AGGTATAGAA CATATGTGGT
  R
  GTGCAGGTCT GTTATCCCAG AACTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45588258	mCV24216193	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss147538920	ENSMUSSNP6378604	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss321350013	CHEV_4_134485127	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31942753					SNP	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134656523 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15054	CpG island 15054	1461 bp proximal
Rr367744	regulatory region 367744	822 bp upstream
Rr601870	regulatory region 601870	272 bp distal
Rr601871	regulatory region 601871	5 bp proximal
Rr601872	regulatory region 601872	1196 bp proximal
Rsrp1	arginine/serine rich protein 1	1842 bp downstream
Syf2	SYF2 homolog, RNA splicing factor (S. cerevisiae)	1768 bp upstream
Tssr39596	transcription start site region 39596	1687 bp upstream
Tssr39597	transcription start site region 39597	1706 bp upstream
Tssr39598	transcription start site region 39598	1734 bp upstream
Tssr43947	transcription start site region 43947	1841 bp upstream