rs31942992 SNP Detail

Summary

• ID
  rs31942992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97273819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAAAGCAT ATTTTCAATA TGCATGTAGT TCTACCTTAC
  ATATATAATG AGAGAATGTA TACCCATATG TTATCTACTA TGTTGATTAA TATTATTAAC
  R
  TGGAATCTGT TACACAGTAT ATAATGAAAA TGCACAGGTT TTATGTAACA TGAGTCAGAC
  CCTGGGTTGA ATCCTTAGCA CTCCCAATAA AGTAGAAAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39343538	mCV22807207	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		A
ss63608393	NES17040120	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G		G	A	G	G	A	G	G
ss148436762	ENSMUSSNP1115128	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31942992					SNP	A	G	G	G	G	G	G	G	G	A	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63608393	NES17040120	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97273819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7620	CpG island 7620	902 bp proximal
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr391162	regulatory region 391162	within coordinates
Tssr132861	transcription start site region 132861	1990 bp downstream
Tssr132862	transcription start site region 132862	1950 bp downstream
Tssr132863	transcription start site region 132863	1902 bp downstream
Tssr132864	transcription start site region 132864	1879 bp downstream
Tssr132865	transcription start site region 132865	1732 bp downstream
Tssr132866	transcription start site region 132866	750 bp upstream
Tssr132867	transcription start site region 132867	1220 bp upstream
Tssr132868	transcription start site region 132868	1242 bp upstream