rs31943425 SNP Detail

Summary

• ID
  rs31943425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12730714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTAATCC CAGCACTCCG
  AAGGCAGAGG CAGGCAGATC TCTGTGATTT GAGACCGGCC TGGTCTACAG AGAGAGTTCC
  AGGACAGCCA GGGCTACACA GAGAAACCCT GTCTCGAAAT AAATAAATAA AAAGAAAGAA
  AGAAAGTTTA AAAAATAAAA AGGAGAATTA AAAGATTGAG CCTTAGCCGG GCATGGTGGC
  R
  CATGCCTTTA ATCCCAGCAC TCGGGAGGCA GAGGCAGGTG GATTTCTGAG TTCGAGGCCA
  GCCTGGTCTA CAAAGTGAGT TCCAGGACAG CCAGGGCTAC AGAGAAACCC TGTCTTGAAA
  AACCAAAAAA AAAAAAAAAA AAAAAAAAAG ATTGAGCCTT GATCAGAAAA AAGAAATAGA
  TAAAATAAAA TTAAAAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46086449	mCV23455521	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss148342437	ENSMUSSNP3502748	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322107104	CHEV_7_13582136	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31943425					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12730714 () rs orientation: forward

Symbol	Name	Function Class
Rr642427	regulatory region 642427	1353 bp proximal
Slc27a5	solute carrier family 27 (fatty acid transporter), member 5	within coordinates
Tssr70630	transcription start site region 70630	629 bp downstream
Tssr70631	transcription start site region 70631	880 bp downstream
Tssr70632	transcription start site region 70632	1323 bp downstream
Tssr70633	transcription start site region 70633	1353 bp downstream
Tssr70634	transcription start site region 70634	1385 bp downstream