rs31943806 SNP Detail

Summary

• ID
  rs31943806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:144417064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG AGAAGGACCC TGAGCGTTCC
  Y
  GATCGGGAGC ATTCTGCCGT CGCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46087108	mCV24316529	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss145992522	ENSMUSSNP4937984	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322484934	CHEV_7_152049232	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31943806					SNP	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:144417064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20003	CpG island 20003	928 bp distal
Cpgi20004	CpG island 20004	361 bp distal
Fgf4	fibroblast growth factor 4	within coordinates
Rr366757	regulatory region 366757	1938 bp downstream
Rr366758	regulatory region 366758	133 bp upstream
Tssr70358	transcription start site region 70358	1932 bp downstream