rs31946017 SNP Detail

Summary

• ID
  rs31946017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126069593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCCTAG ACCAGCAGAC
  ACATCACCAC ACTGCTTAGA AAACAGCCAC GTCAGAACCT AGATTAGCAC AGCAGCACGT
  CTTTGTCGGC AAACTCAGGA AATCCATTTC CTCCCTGTGG TCTCGGTTAC TTGCAATCTG
  ATGTAAGGTC TATGCTAGCT CTAACAATCC AGTCTGTAAT AACTTTCTTG TTGACTGAAC
  R
  CAGCCCTTGT GCCAGGCACT ATGAAGCCAA AACTCAAGAG CCAATGGTCA GGAGAAAAGG
  GTAGAATAGA GGCAGTCTAC AAGGTGAGCT GAGCCAGACA GATATTTTTC TGCATGTGTC
  AGTGTTTGAT CAGGATGAAA GAGGAGGTGC GCACTTGGAA GGCAGAGGCA GGCGGATTTC
  TGAGTTTGAG GCCGGCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46087298	mCV23679426	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss145873597	ENSMUSSNP1441373	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31946017					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126069593 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr655500	regulatory region 655500			within coordinates
Sh2b1	SH2B adaptor protein 1			Intron
				Noncoding-Transcript-Variant
Tssr69026	transcription start site region 69026			25 bp downstream
Tssr74716	transcription start site region 74716			205 bp upstream
Tssr74717	transcription start site region 74717			1023 bp downstream
Tssr74718	transcription start site region 74718			1962 bp downstream
Tssr74719	transcription start site region 74719			1993 bp downstream