rs31946770 SNP Detail

Summary

• ID
  rs31946770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43086567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCCCACCC CTACCACATA GGAGGAGAGG AGCCAATCGA
  AGAGGGGAGG CCAAACCACT CAGGAAGGGA GGGGGTAGGG AAGGTGTGAG AAGAATCAGA
  Y
  CAGACAGAGG ACTCCTGGAC AAAGCCGCTG CTTGCTAGCT GCTTCTCTGG CTCAGAAGAC
  GAGGAATTCG GGTGCATGGC CTTTTTCTTT TTCTAAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46087313	mCV22666140	ABI	CRAMUS_MOUSE	f	SNP	T	T					T	C
ss51478225	NES13970388	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	T		C	T	C	C		T
ss149072672	ENSMUSSNP1839761	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss322196974	CHEV_7_50692513	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31946770					SNP	T	T	T	T	T	T	T	C	T	T	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478225	NES13970388	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43086567 () rs orientation: forward

Symbol	Name	Function Class
Gm52993	predicted gene, 52993	1152 bp downstream
Lim2	lens intrinsic membrane protein 2	1147 bp downstream
Nkg7	natural killer cell group 7 sequence	within coordinates
Rr645958	regulatory region 645958	718 bp distal
Rr645959	regulatory region 645959	671 bp distal
Rr645960	regulatory region 645960	3 bp distal
Tssr2210	transcription start site region 2210	124 bp downstream
Tssr65999	transcription start site region 65999	162 bp downstream
Tssr66000	transcription start site region 66000	within coordinates
Tssr66001	transcription start site region 66001	443 bp upstream
Tssr66002	transcription start site region 66002	457 bp upstream