rs31948903 SNP Detail

Summary

• ID
  rs31948903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86398694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT CCAACTCGGT AGCTTATGCA
  Y
  AGCCTGCTTT GCCTGTGTTC CTGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45087984	mCV24368272	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		T
ss49435727	NES12837606	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	C	C		C	T	C	C	C	T	C	C	T
ss144878414	ENSMUSSNP1425440	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31948903					SNP	C	C	C	T	T	C	C	T	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435727	NES12837606	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86398694 () rs orientation: forward

Symbol	Name	Function Class
Cpgi508	CpG island 508	1246 bp proximal
Gm41907	predicted gene, 41907	within coordinates
Rr371652	regulatory region 371652	755 bp upstream
Rr396149	regulatory region 396149	173 bp downstream
Rr396150	regulatory region 396150	399 bp upstream
Rr414594	regulatory region 414594	583 bp proximal
Rr414595	regulatory region 414595	1725 bp proximal
Tssr7756	transcription start site region 7756	201 bp downstream