rs31949453 SNP Detail

Summary

• ID
  rs31949453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45024824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATATAT ATATATATAT
  ATAGTGAGAG AGAGAGAAAA GTACACATCT TGAAGGCAAA CAGTATGATG GTTCTAATTG
  GGAGGGGAAG AAACACAGGA TTGATATTCC CTGAAGAAGG GTCACTAGAT CTTCAACTGA
  GTCACTACCT GCACAAAATC AAGGCCAGCC TGTCTAAATG GGTTCCAGGA CATCGAGGGC
  Y
  ACAGAGAGAA ACTGTCACCA AAACCCAAAA CAAACCAAAA CAATCAAATA AACAAAAACA
  GCTCCCCCAT CCCCCCAAAA GAAAGAAATC CCAATGAATC TGTTTACTAA GCAAGACTTG
  GCCAGTTGGT TTATTAGTTT CCAGTCTGTA TTCCACAGAC CTTTTTAAAA TTATCTCCTC
  AGAAAAGACT ATATACTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss46087538	mCV22694755	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs31949453					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45024824 () rs orientation: forward

Symbol	Name	Function Class
Rr646426	regulatory region 646426	589 bp distal
Snrnp70	small nuclear ribonucleoprotein 70 (U1)	1053 bp downstream
Tssr66520	transcription start site region 66520	1770 bp upstream