rs31950470 SNP Detail

Summary

• ID
  rs31950470
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99651180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT AACTGCAGAA GATACCGCTC
  R
  GCTCTCTTGG CTCTGGCTGC TCTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45817100	mCV23856285	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					G	A
ss46623076	NES10393084	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A		A	A	G		G	G	A	A		G
ss148918642	ENSMUSSNP2159103	ENSEMBL	ENSEMBL_Sanger	f	SNP			A						A
ss321625674	CHEV_5_99932340	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31950470					SNP	A	A	A	A	A	G	A	G	A	A	G	A	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46623076	NES10393084	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99651180 () rs orientation: forward

Symbol	Name	Function Class
A930011G23Rik	RIKEN cDNA A930011G23 gene	within coordinates
Gm35253	predicted gene, 35253	within coordinates
Gm73139	predicted gene, 73139	468 bp upstream
Rr615301	regulatory region 615301	923 bp proximal
Rr615302	regulatory region 615302	1361 bp proximal