rs31950471 SNP Detail

Summary

• ID
  rs31950471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99651185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGAGGAC CGGCTGGGCT
  GTCGTATCTG CAAATGCACT TTCATGATTA AGATTCCTTG GAAACCAAAC TTTGGATTAG
  GGCAGAAGGC GACCAAGCAC TAATGGGCAG ACCCACTAAC TGGCAAAGAT GCCCTTTATA
  CTGCCCGGAT CCACAGTGTG CTGAGAGCAA CCCCTAACTG CAGAAGATAC CGCTCGGCTC
  Y
  CTTGGCTCTG GCTGCTCTAG CAAAGCACAG TGGCTCGCAA ACAAATGGGT CATAAAGAAA
  AAGCTATTTT TACCCATTCA GGAAGCATTT TGTCCAAGAA CAAGGTGCTG GGCGACTTAG
  GGTCTGGTTG AGGGCTCAAT GCCTGTCCAT GGTGTTCTTT CCGATCACCA CTCTTCATTA
  CTAGGCCTGT CAGAGGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46623077	NES10393085	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31950471					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46623077	NES10393085	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99651185 () rs orientation: forward

Symbol	Name	Function Class
A930011G23Rik	RIKEN cDNA A930011G23 gene	within coordinates
Gm35253	predicted gene, 35253	within coordinates
Gm73139	predicted gene, 73139	473 bp upstream
Rr615301	regulatory region 615301	918 bp proximal
Rr615302	regulatory region 615302	1356 bp proximal