rs31951016 SNP Detail

Summary

• ID
  rs31951016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43861561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAATAAT TCTACCTTTC
  TTTAAAAGAC AGGCTTATGA TTTATTCGGT TTTCCCTCTT TCTAATCCAT TTATTCATTT
  GTGTATTCAT TGAGTAATTG CTGCTTTTTA TCATGTCCAC ACGGGATACA AGAGAGTAGA
  AAAACTGTAG GTCATTGTTC TTTACAGGCC TAATGAAATG TTACTGGGAA CCCTTGAAAC
  R
  AATCTCAAAT CCACCTCTGC TTCTTTTACT ACTGATGCTG TGCACTTAGT GACTAGGTGG
  CCATCTTAGC TATTGTCCAG GTTAGGGCAG AGCTTTCTAG CTGTTTAACA TTTCAGCTTA
  AAAGATGGGG CTTGATTCTG TCAGGCAATC TTGATTCCCA TAACAACAGC CAGTACCAAG
  GTCTTCTCTA GATAAAATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49295133	NES12688990	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31951016					SNP	A	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295133	NES12688990	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43861561 () rs orientation: forward

Symbol	Name	Function Class
Rr345822	regulatory region 345822	961 bp distal
Rr356243	regulatory region 356243	1093 bp distal
Spink1	serine peptidase inhibitor, Kazal type 1	within coordinates