rs31951019 SNP Detail

Summary

• ID
  rs31951019
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43861362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTCAACG AACCCACTTG
  CCAAACATTA CGGTAGCCAT AACAGAGTTC AAAATCTTGA CTTTCAGCAA GGCCCACCTT
  TTCGAATGAG GACAGGCTCT ATGCGTTTCC TGTAGAAGAG ATTTAAGGAA AATAAATTAA
  GGGTCAGCTT GAATTTAACT GGCACAAATA AGTGACTATG GGAGAATAGA AATGAAACTT
  W
  AAAATAATTC TACCTTTCTT TAAAAGACAG GCTTATGATT TATTCGGTTT TCCCTCTTTC
  TAATCCATTT ATTCATTTGT GTATTCATTG AGTAATTGCT GCTTTTTATC ATGTCCACAC
  GGGATACAAG AGAGTAGAAA AACTGTAGGT CATTGTTCTT TACAGGCCTA ATGAAATGTT
  ACTGGGAACC CTTGAAACGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NZW/LacJ	WSB/EiJ
ss49295136	NES12688987	PERLEGEN	MM_PANEL2	f	SNP		T	T		A		T	T
ss147020879	ENSMUSSNP4606045	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T		A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NZW/LacJ	WSB/EiJ
rs31951019					SNP	T	T	T	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295136	NES12688987	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43861362 () rs orientation: forward

Symbol	Name	Function Class
Rr345822	regulatory region 345822	762 bp distal
Rr356243	regulatory region 356243	894 bp distal
Spink1	serine peptidase inhibitor, Kazal type 1	within coordinates