rs31951042 SNP Detail

Summary

• ID
  rs31951042
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171123704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAT TTAAATTTAT ATATTTGTAT
  K
  TCATGTGAGT GTTTTACCAG CATGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45088639	mCV22659320	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G	T
ss119997264	PARCsnp_1.12709	PARC_SEQ	INBRED	f	SNP				G	T
ss119999085	PARCsnp_1.01811	PARC_SEQ	INBRED	f	SNP				G	T
ss146159484	ENSMUSSNP2802881	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss320117872	CHEV_1_173226262	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31951042					SNP	T	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171123704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1022	CpG island 1022	1249 bp distal
Rr28967	regulatory region 28967	504 bp distal
Rr31956	regulatory region 31956	within coordinates
Rr372447	regulatory region 372447	within coordinates
Tssr15031	transcription start site region 15031	1344 bp upstream
Tssr15032	transcription start site region 15032	1292 bp upstream
Tssr15033	transcription start site region 15033	1120 bp upstream
Ufc1	ubiquitin-fold modifier conjugating enzyme 1	1129 bp upstream