rs31951119 SNP Detail

Summary

• ID
  rs31951119
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14929631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTGCCTATCC AGTACTTACC CAGTACTTGC CTATCCAGTA CTTACCCAGT ACTTACTTAT
  CCAGTACTTA CCCAGTACTT ACTTATCCAG TACTTACCCA GTACTTGCCT ATCCAGTACT
  TACCCAGTAC TTACTTATCC AGTACTTACC CAGACCACAA AACTGACTTT GTGTCCCTTT
  GTATTAAGTT CTGTGAGGGC TGTCTGTACC CTGCCATCAC CCCATGTCTG TCTGCCTGCC
  TGTCTGTCTG CCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC ACACACACAC
  W
  CACACACACA CACACACACA CACACACCTT TATGTCCTCC GTCACAGGCC TATAGACATG
  CTGAGGTGAA AAAAATCACA AGAGACTAAA GATGGCAAAG AATGGATTTG TATTCAAATT
  GACTTTGACT AGCTAATTTG AACCTTTCAG GCCTGTAATC TGCAGAGTGT GATATTGTCA
  ACTGAGATCT AGAATCACCT AGGCAACGAA CCTCTGGCTA CGGCTGCGGG AGTTTCTGGA
  CTGGAATGAG GCTGGGAAAG GCTCGCAGGG CTGACTGAAT GGAAGCGAGC TGGTGTTCAA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45589440	mCV23737478	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss45640983	mCV23737490	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss45672608	mCV23737492	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss45693669	mCV23737480	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss45716670	mCV23737491	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs31951119					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14929631 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	206 bp proximal
Gm11837	predicted gene 11837	277 bp upstream
Gm68732	predicted gene, 68732	96 bp downstream
Rr589248	regulatory region 589248	within coordinates
Rr589249	regulatory region 589249	231 bp proximal
Rr589250	regulatory region 589250	819 bp proximal
Rr589251	regulatory region 589251	1056 bp proximal
Tssr36545	transcription start site region 36545	229 bp upstream
Tssr36546	transcription start site region 36546	988 bp upstream
Tssr36547	transcription start site region 36547	1078 bp upstream