rs31951164 SNP Detail

Summary

• ID
  rs31951164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126816190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTATTGG TCAGGACTCA
  GCTTCAAGTA CTGAGCTTTC TCCAGCCTCC CCAACCAGTC CACCCCCAGG GTGCTCTCCA
  GACCCTCGGC CAAAGGGTGA GATGAAGTAG AGGCAGCAAT GGACTCTGGA ATCCTGGATG
  TTCTTCCTGT TCAAGCCACT CTCATCCCTG AGGTATTGCT CAAACTGCTC CTCAATGAAG
  Y
  GAACCACAGG CAGCCAGCTG GTGTGTGGGA AGGAGATAGA TAGTCCGAGA TCACAGGCCA
  GGGGACAAGA TGAAGCTAAC CAGGACTGTG CAGTCCCAAG TCATTTCTTT GCTCCTAACC
  AAAGCCATCA GGGACAGCTG GCCACAGTAC ATGAGACATC AGAATGTGGT GGCTGCACAC
  CTGTAATCTC AGCACTCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46087549	mCV24863219	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss47261362	NES11576926	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	C	C	C	C	C	C	C	T
ss145878296	ENSMUSSNP4600413	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31951164					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261362	NES11576926	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126816190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19732	CpG island 19732	1534 bp distal
Gm71806	predicted gene, 71806	1481 bp upstream
Rr368445	regulatory region 368445	999 bp upstream
Rr655747	regulatory region 655747	1557 bp distal
Rr655748	regulatory region 655748	1275 bp proximal
Rr655749	regulatory region 655749	1508 bp proximal
Septin1	septin 1	within coordinates
Tssr2404	transcription start site region 2404	1494 bp upstream
Tssr74962	transcription start site region 74962	1985 bp upstream
Tssr74963	transcription start site region 74963	1948 bp upstream
Tssr74964	transcription start site region 74964	1915 bp upstream
Tssr74965	transcription start site region 74965	1669 bp upstream
Tssr74966	transcription start site region 74966	1575 bp upstream
Tssr74967	transcription start site region 74967	1323 bp upstream
Tssr74968	transcription start site region 74968	991 bp downstream
Tssr74969	transcription start site region 74969	1353 bp downstream
Tssr74970	transcription start site region 74970	1380 bp downstream
Tssr74971	transcription start site region 74971	1449 bp downstream
Tssr74972	transcription start site region 74972	1713 bp downstream
Tssr74973	transcription start site region 74973	1819 bp downstream