rs31951965 SNP Detail

Summary

• ID
  rs31951965
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43860496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGGTAAG AGTTCAGTTT
  CAAGGCAGGA ATACTGGAAT ATCACCAGAA GTGGGTAACT AGGCAACTCG GCTTTCCTAG
  TGTATTTCTG ATATCCTTGG TTATTTCTGG CTCAGTGGCT GACCAATTCC CCACCAAACT
  ACAGACCCTG ACACAGCCGC ACCTGTGTTA GCTCTCTACC ATCTTTCCAG CTGAGACTTT
  W
  TTTTTTGGTT CTCAGAATCT CAAGATGCTT TCCCTTTTTA TTTTTAAGTA GTTGTAGATA
  TTTTTCATCT TGAGAACATT TCCTTGTTTC TAATTAATTT GACTATATTC TATTACATCT
  ATATTCTATT ATTGAATATA GACATGGGGG AATCTTACAG TAGGGGGCTA TTATCTAGAA
  TTCCCATTGA AGAAAGACAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49295142	NES12688981	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31951965					SNP	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295142	NES12688981	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43860496 () rs orientation: forward

Symbol	Name	Function Class
Rr393629	regulatory region 393629	1537 bp downstream
Rr537115	regulatory region 537115	1801 bp distal
Rr537116	regulatory region 537116	27 bp distal
Rr537117	regulatory region 537117	190 bp distal
Spink1	serine peptidase inhibitor, Kazal type 1	638 bp downstream