rs31951966 SNP Detail

Summary

• ID
  rs31951966
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43860334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCACAGA ACTCCTTAAG
  GTTTGGTGCC CTTCAAGTGT CCTCTAGCAT CACAGATCAG TTGCTGGGAG CCATCTTGCA
  TCCATAACTT GAGATAGCAA GGTATTTGGT GAGAGCTGTC AGGCTGCTTG AGCTGAGCCA
  GTTGCTAGAT TAGAGCATCC TCTAGTGGTA AGAGTTCAGT TTCAAGGCAG GAATACTGGA
  M
  TATCACCAGA AGTGGGTAAC TAGGCAACTC GGCTTTCCTA GTGTATTTCT GATATCCTTG
  GTTATTTCTG GCTCAGTGGC TGACCAATTC CCCACCAAAC TACAGACCCT GACACAGCCG
  CACCTGTGTT AGCTCTCTAC CATCTTTCCA GCTGAGACTT TTTTTTTTGG TTCTCAGAAT
  CTCAAGATGC TTTCCCTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49295143	NES12688980	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31951966					SNP	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295143	NES12688980	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43860334 () rs orientation: forward

Symbol	Name	Function Class
Rr393629	regulatory region 393629	1375 bp downstream
Spink1	serine peptidase inhibitor, Kazal type 1	800 bp downstream