rs31951969 SNP Detail

Summary

• ID
  rs31951969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43860085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACATACCT GCCTTCTGAT
  TGGCGCAGGA AGCCGAGCCA CCAAAGATAG ATTTGAGATT AGTTTTTATA TCTTCTATCT
  CTCTCTGTCT GCATCTCTTT GTCTCTGTCT TTCTGTCTCT CTGTCTCTGT CTCTCTCTCT
  CTCTCTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGAAT TTGCAGACTG
  R
  TCCAACTAGA CAGGGCAACT TATAAGATCC AGTGATTAAA ATAACTCTCC ATCACAGAAC
  TCCTTAAGGT TTGGTGCCCT TCAAGTGTCC TCTAGCATCA CAGATCAGTT GCTGGGAGCC
  ATCTTGCATC CATAACTTGA GATAGCAAGG TATTTGGTGA GAGCTGTCAG GCTGCTTGAG
  CTGAGCCAGT TGCTAGATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49295146	NES12688976	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31951969					SNP	A	A	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295146	NES12688976	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43860085 () rs orientation: forward

Symbol	Name	Function Class
Rr345822	regulatory region 345822	within coordinates
Rr348914	regulatory region 348914	1485 bp distal
Rr356243	regulatory region 356243	within coordinates
Rr393629	regulatory region 393629	1126 bp downstream
Spink1	serine peptidase inhibitor, Kazal type 1	1049 bp downstream