rs31951972 SNP Detail

Summary

• ID
  rs31951972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43859718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCATGA GTATATGAGC
  AGCAGCAACT GGACTCAGTG AGCGGTTAAA AGAATACATT AAGTGAGGAA GGGGAAACCC
  TGGAAAGGGG GACTCGGAAT GAGTTTGAGG GAAGGAGTGC AGGTGATACA GATATTCCAT
  TTAGAGCTGA GTTGCTAATA TCACTATTCT TAATCCTAGA AGTTCTTTTT AAAAGACGCT
  Y
  CCAGTTCAGA GGGATTTTCT TTTCAGTCAA TTTTCTTTCT TTGAATCATT CTTCATAGGT
  TGAAGCTTAA TGTACTTCCC GGTGTTGATA GTTTTGCTCT TTTAAGCATG CTCTGGCTTA
  CTAGATAGTC CTTTTGAAAT ATAAGTACTG TACACAGAGA CAGACTCTAC ATACCTGCCT
  TCTGATTGGC GCAGGAAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49295149	NES12688971	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31951972					SNP	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295149	NES12688971	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43859718 () rs orientation: forward

Symbol	Name	Function Class
Rr345822	regulatory region 345822	283 bp proximal
Rr348914	regulatory region 348914	1118 bp distal
Rr356243	regulatory region 356243	308 bp proximal
Rr393629	regulatory region 393629	759 bp downstream
Spink1	serine peptidase inhibitor, Kazal type 1	1416 bp downstream