rs31952123 SNP Detail

Summary

• ID
  rs31952123
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99654027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCAATGA CATTTGAGTG
  GCCTTCACCG GCACTGTCTA ACACAGGAGG GAATAAAAGA CGCAGCCGGG GCATGTATGA
  ATGGCCACAG TCAAGAGTTC ACGTGCTGAA GGGAGACAAA CGTTTACAGA CAGAAGGAAA
  AGGCATGTTT CAACAGAGTC CTTGTTATTT TCAGTCTCAT GGAAACAAAT ATTTGCTGTG
  Y
  CCAATCATCA AGTCTATTGA AGGCAACTTA AGGCATTACA AACAAGATCG TCATGTAAAA
  TTGTAATGGG AGACGCCACA ACGATGAACG CAGATGTGAC TGCACGGAAA TCTGCCAGAT
  TTGGAACAAT CCACACATGG CAGGCCTTAT CCTGGGAGTC ACGCCCCTCT GTACAGCTGT
  ATAGAGCCTT TATTTAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46623099	NES10392949	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31952123					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46623099	NES10392949	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99654027 () rs orientation: forward

Symbol	Name	Function Class
A930011G23Rik	RIKEN cDNA A930011G23 gene	within coordinates
Gm35253	predicted gene, 35253	within coordinates
Rr615301	regulatory region 615301	1297 bp distal
Rr615302	regulatory region 615302	1465 bp distal