rs31952393 SNP Detail

Summary

• ID
  rs31952393
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155924842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA GGAAGGCTAG CAGGGGAACA
  W
  ACTGCACCTA GGGTGTGTGT GTGTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss45589819	mCV24238763	ABI	CRAMUS_MOUSE	f	SNP		A		T	A
ss46784469	NES10993761	PERLEGEN	MM_PANEL2	f	SNP	A	A	A		A	T		T
ss321443280	CHEV_4_155214494	CHEVERUD	SCREENING_POP	f	SNP							T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs31952393					SNP	A	A	A	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46784469	NES10993761	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155924842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	427 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	within coordinates
Mxra8os	matrix-remodelling associated 8, opposite strand	207 bp upstream
Rr398927	regulatory region 398927	799 bp upstream
Tssr40724	transcription start site region 40724	701 bp downstream
Tssr40725	transcription start site region 40725	681 bp downstream
Tssr40726	transcription start site region 40726	623 bp downstream
Tssr40727	transcription start site region 40727	561 bp downstream
Tssr40728	transcription start site region 40728	545 bp downstream
Tssr40729	transcription start site region 40729	716 bp upstream
Tssr40730	transcription start site region 40730	736 bp upstream
Tssr40731	transcription start site region 40731	761 bp upstream
Tssr40732	transcription start site region 40732	783 bp upstream
Tssr40733	transcription start site region 40733	1027 bp upstream
Tssr44980	transcription start site region 44980	643 bp downstream
Tssr44981	transcription start site region 44981	709 bp downstream