rs31952742 SNP Detail

Summary

• ID
  rs31952742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43858281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCATTAA CCTTAGTGAG
  TTCCTCCTGC AGAGTGCACC AAGGGCAACC GGAGGAACCG GTTTCTGTGG TAGACTGCAA
  AGAGGCTTAA TTTCCTTGTA GAATCTTTAG ACAAATTATC AAAGACGCTT CTAAAGGTCT
  TTTGTTCCCA GGAAACTCCG CTGCAATCAC AATCTAAGAA TTGTCATGAG AGTAAGCATC
  R
  CAAGAGATAG AAGGGCTCAA GTCCTTTCCT AGGGTGAGGG CAGGGGCCTG CAGCATCTTC
  TCCACAGGTC CTCGCTAGGT GGGTGGGGAA CCTCCAAAGA GCCTTGCCTA AGGATCAGCA
  TTTGCAAAAC AGTCAAGAGC TGTTCCTAGA GGTTAGTTCC AGCATAGCTT CTGGAAGCTG
  AGGATGTTTG AAAAGTCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49295159	NES12688961	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31952742					SNP	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295159	NES12688961	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43858281 () rs orientation: forward

Symbol	Name	Function Class
Rr345822	regulatory region 345822	1720 bp proximal
Rr348914	regulatory region 348914	within coordinates
Rr356243	regulatory region 356243	1745 bp proximal
Rr393629	regulatory region 393629	within coordinates